Systems biology

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

Alexandra Keenan, Sherry L. Jenkins, Kathleen M. Jagodnik, Simon Koplev, Edward He, Denis Torre, Zichen Wang, Anders B. Dohlman, Moshe C. Silverstein, Alexander Lachmann, Maxim V. Kuleshov, Avi Ma’ayan, Vasileios Stathias, Raymond Terryn, Daniel J. Cooper, Michele Forlin, Amar Koleti, D. Vidović, Caty Chung, Stephan C. Schürer, Jouzas Vasiliauskas, Marcin Pilarczyk, Behrouz Shamsaei, Mehdi Fazel, Yan Ren, Wen Niu, Nicholas A. Clark, Shana White, Naim Al Mahi, Lixia Zhang, Michal Kouril, John F. Reichard, Siva Sivaganesan, Mario Medvedovic, Jarek Meller, Rick J. Koch, Marc R. Birtwistle, Ravi Iyengar, Eric A. Sobie, Evren U. Azeloglu, Julia Kaye, Jeannette M. Osterloh, Kelly Haston, Jaslin Kalra, Steve Finkbiener, Jonathan Li, Pamela Milani, Miriam Adam, Renan Escalante-Chong, Karen Sachs, Alex Lenail, Divya Ramamoorthy, Ernest Fraenkel, Gavin Daigle, Uzma Hussain, Alyssa Coye, Jeffrey Rothstein, Dhruv Sareen, Loren Ornelas, Maria G. Bañuelos, Berhan Mandefro, Ritchie Ho, Clive N. Svendsen, Ryan G. Lim, Jennifer Stocksdale, Malcolm Casale, Terri G. Thompson, Jie Wu, Leslie M. Thompson, Victoria Dardov, Vidya Venkatraman, Andrea Matlock, Jennifer E. Van Eyk, Jacob D. Jaffe, Malvina Papanastasiou, Aravind Subramanian, Todd R. Golub, Sean D. Erickson, Mohammad Fallahi‐Sichani, Marc Hafner, Nathanael S. Gray, Jia‐Ren Lin, Caitlin E. Mills, Jeremy L. Muhlich, Mario Niepel, Caroline E. Shamu, Elizabeth H. Williams, David M. Wrobel, Peter K. Sorger, Laura M. Heiser, Joe W. Gray, James E. Korkola, Gordon B. Mills, Mark A. LaBarge, Heidi S. Feiler, Mark Dane, Elmar Bucher, Michel Nederlof, Damir Sudar, Sean M. Gross

Citations: 447 • 2017

Hierarchy of non-glucose sugars in Escherichia coli

Guy Aidelberg, Benjamin D. Towbin, Daphna Rothschild, E. Dekel, Anat Bren, Uri Alon

Citations: 176 • 2014

Why measure enzyme activities in the era of systems biology?

Mark Stitt, Yves Gibon

Citations: 85 • 2013

Principles of synthetic biology

Citations: 77 • 2021

The Cell in an Era of Systems Biology

Paul Nurse, Jacqueline Hayles

Citations: 72 • 2011

Postgenomic futures: translations across the machine-nature border in systems biology

Joan H. Fujimura

Citations: 68 • 2005

Principles of synthetic biology

Kathryn Garner

Citations: 58 • 2021

Advances and future outlooks in soft robotics for minimally invasive marine biology

David F. Gruber, Robert J. Wood

Citations: 47 • 2022

RoboMoClo: A Robotics-Assisted Modular Cloning Framework for Multiple Gene Assembly in Biofoundry

Dong Hun Kang, Sung Cheon Ko, Yu Been Heo, Hyun Jeong Lee, Han Min Woo

Citations: 43 • 2022

Artificial Symmetry-Breaking for Morphogenetic Engineering Bacterial Colonies

Isaac Núñez, Tamara Matúte, Ilenne Del Valle, Anton Kan, Atri Choksi, Drew Endy, Jim Haseloff, Timothy J. Rudge, Fernán Federici

Citations: 43 • 2016

A novel platform for automated high-throughput fluxome profiling of metabolic variants

Stéphanie Heux, Juliette Poinot, Stéphane Massou, Sergueï Sokol, Jean‐Charles Portais

Citations: 37 • 2014

Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeast

Anthony Coutant, Katherine Roper, Daniel Trejo Baños, Dominique Bouthinon, Martin Carpenter, Jacek Grzebyta, Guillaume Santini, Henry Soldano, Mohamed Elati, Jan Ramon, Céline Rouveirol, Larisa Soldatova, Ross D. King

Citations: 32 • 2019

Dynamic morphometric characterization of local connective tissue network structure in humans using ultrasound

Hélène M. Langevin, Donna M. Rizzo, James R. Fox, Gary J. Badger, Junru Wu, Elisa E. Konofagou, Debbie Stevens‐Tuttle, Nicole A. Bouffard, Martin H. Krag

Citations: 31 • 2007

Structural genomics for science and society.

W.G.J. Hol

Citations: 30 • 2000

Control theory in biology and medicine

Peter J. Thomas, Mette S. Olufsen, Rodolphe Sepulchre, Pablo A. Iglesias, Auke Jan Ijspeert, Manoj Srinivasan

Citations: 28 • 2019

Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells

Keith C. Heyde, Warren C. Ruder

Citations: 25 • 2015

Optimization of protein expression systems for modern drug discovery

Michael Forstner, Lukas Leder, Lorenz M. Mayr

Citations: 24 • 2007

The elusive field of systems biology

Allen W. Cowley

Citations: 23 • 2004

Next-generation engineered microsystems for cell biology: a systems-level roadmap

Subramanian Sundaram, Christopher S. Chen

Citations: 19 • 2022

Augmenting Surgery via Multi-scale Modeling and Translational Systems Biology in the Era of Precision Medicine: A Multidisciplinary Perspective

Ghassan S. Kassab, Gary An, Edward A. Sander, Michael I. Miga, Julius M. Guccione, Songbai Ji, Yoram Vodovotz

Citations: 17 • 2016